J5_4YBB_018
3D structure
- PDB id
- 4YBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4YBB|1|DA|U|2076, 4YBB|1|DA|G|2428, 4YBB|1|DA|G|2429||A, 4YBB|1|DA|A|2430||A, 4YBB|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4YBB_018 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.097
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4YBB|1|DA|U|2074
4YBB|1|DA|U|2075
4YBB|1|DA|U|2076
4YBB|1|DA|A|2077
*
4YBB|1|DA|U|2243
4YBB|1|DA|U|2244
4YBB|1|DA|U|2245
4YBB|1|DA|G|2246
*
4YBB|1|DA|C|2258
4YBB|1|DA|U|2259
*
4YBB|1|DA|A|2281
4YBB|1|DA|G|2282
*
4YBB|1|DA|C|2427
4YBB|1|DA|G|2428
4YBB|1|DA|G|2429||A
4YBB|1|DA|A|2430||A
4YBB|1|DA|U|2431
4YBB|1|DA|A|2432
4YBB|1|DA|A|2433
4YBB|1|DA|A|2434
4YBB|1|DA|A|2435
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L33
- Chain D4
- 50S ribosomal protein L35
- Chain DC
- 50S ribosomal protein L2
- Chain DM
- 50S ribosomal protein L15
- Chain DX
- 50S ribosomal protein L27
- Chain DY
- 50S ribosomal protein L28
Coloring options: