J5_4YPB_017
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4YPB|1|YA|G|1758, 4YPB|1|YA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4YPB_017 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.0989
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4YPB|1|YA|G|1674
4YPB|1|YA|C|1675
4YPB|1|YA|A|1676
4YPB|1|YA|A|1677
4YPB|1|YA|G|1678
4YPB|1|YA|U|1679
4YPB|1|YA|U|1680
4YPB|1|YA|G|1681
4YPB|1|YA|G|1682
*
4YPB|1|YA|U|1706
4YPB|1|YA|G|1707
*
4YPB|1|YA|C|1751
4YPB|1|YA|C|1752
*
4YPB|1|YA|G|1756
4YPB|1|YA|U|1757
4YPB|1|YA|G|1758
4YPB|1|YA|A|1759
4YPB|1|YA|A|1760
4YPB|1|YA|C|1761
4YPB|1|YA|A|1762
4YPB|1|YA|G|1763
4YPB|1|YA|G|1764
*
4YPB|1|YA|C|1988
4YPB|1|YA|G|1989
4YPB|1|YA|C|1990
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YE
- 50S ribosomal protein L3
- Chain YO
- 50S ribosomal protein L14
- Chain YT
- 50S ribosomal protein L19
Coloring options: