J5_4YZV_001

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4YZV_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0648

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4YZV|1|QA|C|36
4YZV|1|QA|U|37
4YZV|1|QA|G|38
4YZV|1|QA|G|39
*
4YZV|1|QA|C|403
4YZV|1|QA|U|404
4YZV|1|QA|U|405
4YZV|1|QA|G|406
*
4YZV|1|QA|C|436
4YZV|1|QA|U|437
4YZV|1|QA|G|438
4YZV|1|QA|A|439
4YZV|1|QA|A|440
4YZV|1|QA|C|442
*
4YZV|1|QA|G|492
4YZV|1|QA|G|493
4YZV|1|QA|U|494
4YZV|1|QA|A|495
4YZV|1|QA|A|496
4YZV|1|QA|U|497
4YZV|1|QA|A|498
4YZV|1|QA|G|500
*
4YZV|1|QA|C|545
4YZV|1|QA|G|546
4YZV|1|QA|A|547
4YZV|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9