J5_4YZV_006
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4YZV|1|RA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4YZV_006 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0708
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4YZV|1|RA|C|584
4YZV|1|RA|G|585
4YZV|1|RA|A|586
4YZV|1|RA|C|587
4YZV|1|RA|U|588
4YZV|1|RA|C|589
*
4YZV|1|RA|G|668
4YZV|1|RA|G|669
4YZV|1|RA|A|670
4YZV|1|RA|C|671
*
4YZV|1|RA|G|809
4YZV|1|RA|U|810
4YZV|1|RA|U|811
4YZV|1|RA|C|812
*
4YZV|1|RA|G|1195
4YZV|1|RA|C|1196
*
4YZV|1|RA|G|1250
4YZV|1|RA|C|1251
4YZV|1|RA|G|1252
4YZV|1|RA|A|1253
4YZV|1|RA|A|1254
4YZV|1|RA|U|1255
4YZV|1|RA|G|1256
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R8
- 50S ribosomal protein L35
- Chain RF
- 50S ribosomal protein L4
- Chain RP
- 50S ribosomal protein L15
- Chain RU
- 50S ribosomal protein L20
- Chain RV
- 50S ribosomal protein L21
Coloring options: