J5_4Z3S_007

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4Z3S|1|1A|U|2076, 4Z3S|1|1A|G|2428, 4Z3S|1|1A|G|2429, 4Z3S|1|1A|A|2430, 4Z3S|1|1A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4Z3S_007 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.049

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4Z3S|1|1A|U|2074
4Z3S|1|1A|U|2075
4Z3S|1|1A|U|2076
4Z3S|1|1A|A|2077
*
4Z3S|1|1A|U|2243
4Z3S|1|1A|U|2244
4Z3S|1|1A|U|2245
4Z3S|1|1A|G|2246
*
4Z3S|1|1A|C|2258
4Z3S|1|1A|G|2259
*
4Z3S|1|1A|C|2281
4Z3S|1|1A|G|2282
*
4Z3S|1|1A|C|2427
4Z3S|1|1A|G|2428
4Z3S|1|1A|G|2429
4Z3S|1|1A|A|2430
4Z3S|1|1A|U|2431
4Z3S|1|1A|A|2432
4Z3S|1|1A|A|2433
4Z3S|1|1A|A|2434
4Z3S|1|1A|A|2435

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 1D

50S ribosomal protein L2

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA