J5_4Z8C_018

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4Z8C_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0767

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4Z8C|1|2a|C|37
4Z8C|1|2a|U|38
4Z8C|1|2a|G|39
4Z8C|1|2a|G|40
*
4Z8C|1|2a|C|399
4Z8C|1|2a|U|400
4Z8C|1|2a|U|401
4Z8C|1|2a|G|402
*
4Z8C|1|2a|C|432
4Z8C|1|2a|U|433
4Z8C|1|2a|G|434
4Z8C|1|2a|A|435
4Z8C|1|2a|A|436
4Z8C|1|2a|C|437
*
4Z8C|1|2a|G|477
4Z8C|1|2a|G|478
4Z8C|1|2a|U|479
4Z8C|1|2a|A|480
4Z8C|1|2a|A|481
4Z8C|1|2a|U|482
4Z8C|1|2a|A|483
4Z8C|1|2a|G|484
*
4Z8C|1|2a|C|529
4Z8C|1|2a|G|530
4Z8C|1|2a|A|531
4Z8C|1|2a|G|532

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12