J5_4ZER_010

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4ZER|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4ZER_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.059

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4ZER|1|2A|C|47
4ZER|1|2A|G|48
4ZER|1|2A|A|49
4ZER|1|2A|U|50
4ZER|1|2A|G|51
4ZER|1|2A|A|52
4ZER|1|2A|A|53
4ZER|1|2A|G|54
*
4ZER|1|2A|C|116
4ZER|1|2A|G|117
4ZER|1|2A|A|118
4ZER|1|2A|A|119
4ZER|1|2A|U|120
4ZER|1|2A|G|121
*
4ZER|1|2A|C|130
4ZER|1|2A|G|131
*
4ZER|1|2A|C|148
4ZER|1|2A|A|149
4ZER|1|2A|C|150
*
4ZER|1|2A|G|176
4ZER|1|2A|G|177
4ZER|1|2A|G|178

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23