J5_4ZSN_011

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4ZSN_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0569

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4ZSN|1|XA|C|36
4ZSN|1|XA|U|37
4ZSN|1|XA|G|38
4ZSN|1|XA|G|39
*
4ZSN|1|XA|C|403
4ZSN|1|XA|U|404
4ZSN|1|XA|U|405
4ZSN|1|XA|G|406
*
4ZSN|1|XA|C|436
4ZSN|1|XA|U|437
4ZSN|1|XA|G|438
4ZSN|1|XA|A|439
4ZSN|1|XA|A|440
4ZSN|1|XA|C|442
*
4ZSN|1|XA|G|492
4ZSN|1|XA|G|493
4ZSN|1|XA|U|494
4ZSN|1|XA|A|495
4ZSN|1|XA|A|496
4ZSN|1|XA|U|497
4ZSN|1|XA|A|498
4ZSN|1|XA|G|500
*
4ZSN|1|XA|C|545
4ZSN|1|XA|G|546
4ZSN|1|XA|A|547
4ZSN|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12