J5_5A2Q_002
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5A2Q|1|2|U|55, 5A2Q|1|2|A|92, 5A2Q|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5A2Q_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0812
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5A2Q|1|2|C|53
5A2Q|1|2|A|54
5A2Q|1|2|U|55
5A2Q|1|2|G|56
*
5A2Q|1|2|C|89
5A2Q|1|2|G|90
5A2Q|1|2|A|91
5A2Q|1|2|A|92
5A2Q|1|2|U|93
5A2Q|1|2|G|94
5A2Q|1|2|G|95
5A2Q|1|2|C|96
*
5A2Q|1|2|G|434
5A2Q|1|2|A|435
5A2Q|1|2|G|436
*
5A2Q|1|2|C|457
5A2Q|1|2|A|458
5A2Q|1|2|C|459
*
5A2Q|1|2|G|470
5A2Q|1|2|G|471
5A2Q|1|2|C|472
5A2Q|1|2|A|473
5A2Q|1|2|G|474
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain E
- RIBOSOMAL PROTEIN ES4
- Chain G
- RIBOSOMAL PROTEIN ES6
- Chain I
- RIBOSOMAL PROTEIN ES8
- Chain J
- RIBOSOMAL PROTEIN US4
- Chain Y
- RIBOSOMAL PROTEIN ES24
Coloring options: