J5_5A8L_001
3D structure
- PDB id
- 5A8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human eRF1 and the hCMV nascent peptide in the translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 5A8L|1|A|A|3880, 5A8L|1|A|A|4357, 5A8L|1|A|U|4358, 5A8L|1|A|U|4415, 5A8L|1|A|U|4518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5A8L|1|A|A|3875
5A8L|1|A|G|3876
5A8L|1|A|A|3877
5A8L|1|A|A|3878
5A8L|1|A|G|3879
5A8L|1|A|A|3880
5A8L|1|A|C|3881
5A8L|1|A|C|3882
*
5A8L|1|A|G|4355
5A8L|1|A|G|4356
5A8L|1|A|A|4357
5A8L|1|A|U|4358
5A8L|1|A|A|4359
5A8L|1|A|A|4360
5A8L|1|A|C|4361
5A8L|1|A|U|4362
5A8L|1|A|G|4363
*
5A8L|1|A|C|4407
5A8L|1|A|U|4408
5A8L|1|A|U|4409
5A8L|1|A|C|4410
5A8L|1|A|G|4411
5A8L|1|A|A|4412
5A8L|1|A|U|4413
5A8L|1|A|G|4414
5A8L|1|A|U|4415
5A8L|1|A|C|4416
*
5A8L|1|A|G|4491
5A8L|1|A|G|4492
5A8L|1|A|U|4493
5A8L|1|A|U|4494
5A8L|1|A|U|4495
5A8L|1|A|A|4496
5A8L|1|A|G|4497
*
5A8L|1|A|U|4515
5A8L|1|A|A|4516
5A8L|1|A|G|4517
5A8L|1|A|U|4518
5A8L|1|A|U|4519
5A8L|1|A|U|4520
Current chains
- Chain A
- 28S RIBOSOMAL RNA
Nearby chains
- Chain P
- P-SITE TRNA
- Chain Q
- EUKARYOTIC RELEASE FACTOR ERF1
- Chain Z
- NASCENT CHAIN
Coloring options: