J5_5A9Z_005

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

5A9Z|1|AA|U|2075||||P_1, 5A9Z|1|AA|U|2076||||P_1, 5A9Z|1|AA|A|2430||||P_1, 5A9Z|1|AA|U|2431||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5A9Z_005 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.3058

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5A9Z|1|AA|U|2074||||P_1
5A9Z|1|AA|U|2075||||P_1
5A9Z|1|AA|U|2076||||P_1
5A9Z|1|AA|A|2077||||P_1
*
5A9Z|1|AA|U|2243||||P_1
5A9Z|1|AA|U|2244||||P_1
5A9Z|1|AA|U|2245||||P_1
5A9Z|1|AA|G|2246||||P_1
*
5A9Z|1|AA|C|2258||||P_1
5A9Z|1|AA|G|2259||||P_1
*
5A9Z|1|AA|C|2281||||P_1
5A9Z|1|AA|G|2282||||P_1
*
5A9Z|1|AA|C|2427||||P_1
5A9Z|1|AA|G|2428||||P_1
5A9Z|1|AA|G|2429||||P_1
5A9Z|1|AA|A|2430||||P_1
5A9Z|1|AA|U|2431||||P_1
5A9Z|1|AA|A|2432||||P_1
5A9Z|1|AA|A|2433||||P_1
5A9Z|1|AA|A|2434||||P_1
5A9Z|1|AA|A|2435||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AM

50S ribosomal protein L15

Chain AX

50S ribosomal protein L27

Chain Aa

50S ribosomal protein L31