Loop J5_5AA0

General information

3D structure

PDB id: 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å

Loop

Sequence: UUUA*UUUG*CG*CG*CGGAUAAAA
Length: 21 nucleotides
Bulged bases: 5AA0|1|AA|U|2075||||P_1, 5AA0|1|AA|U|2076||||P_1, 5AA0|1|AA|A|2430||||P_1, 5AA0|1|AA|U|2431||||P_1
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

J5_5AA0_005 not in the Motif Atlas
Homologous match to J5_7A0S_007: Geometric discrepancy: 0.3058; The information below is about J5_7A0S_007
Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J5_39529.1
Basepair signature: cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group: 3

Unit IDs

5AA0|1|AA|U|2074||||P_1
5AA0|1|AA|U|2075||||P_1
5AA0|1|AA|U|2076||||P_1
5AA0|1|AA|A|2077||||P_1
*
5AA0|1|AA|U|2243||||P_1
5AA0|1|AA|U|2244||||P_1
5AA0|1|AA|U|2245||||P_1
5AA0|1|AA|G|2246||||P_1
*
5AA0|1|AA|C|2258||||P_1
5AA0|1|AA|G|2259||||P_1
*
5AA0|1|AA|C|2281||||P_1
5AA0|1|AA|G|2282||||P_1
*
5AA0|1|AA|C|2427||||P_1
5AA0|1|AA|G|2428||||P_1
5AA0|1|AA|G|2429||||P_1
5AA0|1|AA|A|2430||||P_1
5AA0|1|AA|U|2431||||P_1
5AA0|1|AA|A|2432||||P_1
5AA0|1|AA|A|2433||||P_1
5AA0|1|AA|A|2434||||P_1
5AA0|1|AA|A|2435||||P_1

Current chains

Chain AA: 23S ribosomal RNA

Nearby chains

Chain AD: 50S ribosomal protein L2
Chain AM: 50S ribosomal protein L15
Chain AX: 50S ribosomal protein L27
Chain Aa: 50S ribosomal protein L31
Chain BC: Transfer RNA; tRNA
Chain BE: Transfer RNA; tRNA

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Coloring options:
Nucleotide numbers

J5_5AA0_005
J5_7A0S_007 (superposition may be poor)