J5_5AH5_001

3D structure

PDB id

5AH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ternary complex of Agrobacterium radiobacter K84 agnB2 LeuRS-tRNA-LeuAMS

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AUGG*CAUC*GCCG*CUUG*CU

Length

18 nucleotides

Bulged bases

5AH5|1|C|U|8, 5AH5|1|C|G|9, 5AH5|1|C|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5AH5_001 not in the Motif Atlas

Homologous match to J5_5AH5_002

Geometric discrepancy: 0.0791

The information below is about J5_5AH5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_48228.1

Basepair signature

cWW-F-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5AH5|1|C|A|7
5AH5|1|C|U|8
5AH5|1|C|G|9
5AH5|1|C|G|10
*
5AH5|1|C|C|25
5AH5|1|C|A|26
5AH5|1|C|U|27
5AH5|1|C|C|28
*
5AH5|1|C|G|42
5AH5|1|C|C|43
5AH5|1|C|C|44
5AH5|1|C|G|45
*
5AH5|1|C|C|46|||G
5AH5|1|C|U|47
5AH5|1|C|U|48
5AH5|1|C|G|49
*
5AH5|1|C|C|65
5AH5|1|C|U|66

Current chains

Chain C

TRNA-LEU TAA ISOACCEPTOR

Nearby chains

Chain A

LEUCINE--TRNA LIGASE