5AH5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5AH5_001 | 1/C/12:23 | tRNA D-loop | homologous HL_5AH5_005 HL_68767.1 | |
| HL_5AH5_003 | 1/C/46A:46E | Mini UNCG | homologous HL_5AH5_007 HL_48778.2 | |
| HL_5AH5_004 | 1/C/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_28252.9 | |
| HL_5AH5_005 | 1/D/12:23 | tRNA D-loop HL_68767.1 | ||
| HL_5AH5_007 | 1/D/46A:46E | Mini UNCG HL_48778.2 | ||
| HL_5AH5_008 | 1/D/53:61 | T-loop with 2 stacked bulged bases HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5AH5_002 | No text annotation | ||
| HL_5AH5_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_5AH5_001 | 1/C/7:10, 1/C/25:28, 1/C/42:45, 1/C/46:49, 1/C/65:66 | No text annotation | homologous J5_5AH5_002 J5_48228.1 | |
| J5_5AH5_002 | 1/D/7:10, 1/D/25:28, 1/D/42:45, 1/D/46:49, 1/D/65:66 | No text annotation J5_48228.1 |
Problematic loops
No problematic loops
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