5AH5 | Motifs

Loop id	Location	Annotation; motif group	Mapped info
HL_5AH5_001	1/C/12:23	tRNA D-loop	homologous HL_5AH5_005 HL_68767.1
HL_5AH5_003	1/C/46A:46E	Mini UNCG	homologous HL_5AH5_007 HL_48778.2
HL_5AH5_004	1/C/53:61	T-loop with 2 stacked bulged bases	homologous HL_5AH5_008 HL_28252.8
HL_5AH5_005	1/D/12:23	tRNA D-loop HL_68767.1
HL_5AH5_007	1/D/46A:46E	Mini UNCG HL_48778.2
HL_5AH5_008	1/D/53:61	T-loop with 2 stacked bulged bases HL_28252.8

#	loop id	Problem	Sequence
	HL_5AH5_002	missing nts	No text annotation
	HL_5AH5_006	missing nts	No text annotation

#	loop id	Problem	Sequence
	IL_5AH5_001	missing nts	No text annotation

3D	Loop id	Location	Annotation; motif group	Mapped info
	J5_5AH5_001	1/C/7:10, 1/C/25:28, 1/C/42:45, 1/C/46:49, 1/C/65:66	No text annotation	homologous J5_5AH5_002 J5_48228.1
	J5_5AH5_002	1/D/7:10, 1/D/25:28, 1/D/42:45, 1/D/46:49, 1/D/65:66	No text annotation J5_48228.1

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Coloring options: Nucleotide numbers

5AH5 Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops