3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUG*CGAUGAAG*CGAACG*CG*UAC
Length
22 nucleotides
Bulged bases
5AJ0|1|A3|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5AJ0_001 not in the Motif Atlas
Homologous match to J5_8C3A_001
Geometric discrepancy: 0.1267
The information below is about J5_8C3A_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5AJ0|1|A2|G|19
5AJ0|1|A2|U|20
5AJ0|1|A2|G|21
*
5AJ0|1|A3|C|35
5AJ0|1|A3|G|36
5AJ0|1|A3|A|37
5AJ0|1|A3|U|38
5AJ0|1|A3|G|39
5AJ0|1|A3|A|40
5AJ0|1|A3|A|41
5AJ0|1|A3|G|42
*
5AJ0|1|A3|C|101
5AJ0|1|A3|G|102
5AJ0|1|A3|A|103
5AJ0|1|A3|A|104
5AJ0|1|A3|C|105
5AJ0|1|A3|G|106
*
5AJ0|1|A3|C|113
5AJ0|1|A3|G|114
*
5AJ0|1|A3|U|136
5AJ0|1|A3|A|137
5AJ0|1|A3|C|138

Current chains

Chain A2
28S ribosomal RNA
Chain A3
5.8S ribosomal RNA

Nearby chains

Chain AN
60S ribosomal protein L15
Chain AX
60S ribosomal protein L23a
Chain Ah
60S ribosomal protein L35
Chain Aj
60S ribosomal protein L37
Chain Al
60S ribosomal protein L39

Coloring options:


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