J5_5AJ0_001
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 5AJ0|1|A3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5AJ0_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.1267
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|G|19
5AJ0|1|A2|U|20
5AJ0|1|A2|G|21
*
5AJ0|1|A3|C|35
5AJ0|1|A3|G|36
5AJ0|1|A3|A|37
5AJ0|1|A3|U|38
5AJ0|1|A3|G|39
5AJ0|1|A3|A|40
5AJ0|1|A3|A|41
5AJ0|1|A3|G|42
*
5AJ0|1|A3|C|101
5AJ0|1|A3|G|102
5AJ0|1|A3|A|103
5AJ0|1|A3|A|104
5AJ0|1|A3|C|105
5AJ0|1|A3|G|106
*
5AJ0|1|A3|C|113
5AJ0|1|A3|G|114
*
5AJ0|1|A3|U|136
5AJ0|1|A3|A|137
5AJ0|1|A3|C|138
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AN
- 60S ribosomal protein L15
- Chain AX
- 60S ribosomal protein L23a
- Chain Ah
- 60S ribosomal protein L35
- Chain Aj
- 60S ribosomal protein L37
- Chain Al
- 60S ribosomal protein L39
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