3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCAGCGCC*GCGUACGG*CCGGAGUCG*CAAAGCG*UAAG
Length
36 nucleotides
Bulged bases
5AJ0|1|A2|G|157, 5AJ0|1|A2|C|303
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5AJ0|1|A2|C|111
5AJ0|1|A2|C|112
5AJ0|1|A2|A|113
5AJ0|1|A2|G|114
5AJ0|1|A2|C|115
5AJ0|1|A2|G|116
5AJ0|1|A2|C|117
5AJ0|1|A2|C|118
*
5AJ0|1|A2|G|151
5AJ0|1|A2|C|152
5AJ0|1|A2|G|153
5AJ0|1|A2|U|154
5AJ0|1|A2|A|155
5AJ0|1|A2|C|156
5AJ0|1|A2|G|157
5AJ0|1|A2|G|158
*
5AJ0|1|A2|C|269
5AJ0|1|A2|C|270
5AJ0|1|A2|G|271
5AJ0|1|A2|G|272
5AJ0|1|A2|A|273
5AJ0|1|A2|G|274
5AJ0|1|A2|U|275
5AJ0|1|A2|C|276
5AJ0|1|A2|G|277
*
5AJ0|1|A2|C|298
5AJ0|1|A2|A|299
5AJ0|1|A2|A|300
5AJ0|1|A2|A|301
5AJ0|1|A2|G|302
5AJ0|1|A2|C|303
5AJ0|1|A2|G|304
*
5AJ0|1|A2|U|321
5AJ0|1|A2|A|322
5AJ0|1|A2|A|323
5AJ0|1|A2|G|324

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AG
60S ribosomal protein L7a
Chain AL
60S ribosomal protein L13
Chain AN
60S ribosomal protein L15
Chain Ah
60S ribosomal protein L35
Chain Ai
60S ribosomal protein L36

Coloring options:

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