J5_5AJ0_002
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAGCGCC*GCGUACGG*CCGGAGUCG*CAAAGCG*UAAG
- Length
- 36 nucleotides
- Bulged bases
- 5AJ0|1|A2|G|157, 5AJ0|1|A2|C|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|C|111
5AJ0|1|A2|C|112
5AJ0|1|A2|A|113
5AJ0|1|A2|G|114
5AJ0|1|A2|C|115
5AJ0|1|A2|G|116
5AJ0|1|A2|C|117
5AJ0|1|A2|C|118
*
5AJ0|1|A2|G|151
5AJ0|1|A2|C|152
5AJ0|1|A2|G|153
5AJ0|1|A2|U|154
5AJ0|1|A2|A|155
5AJ0|1|A2|C|156
5AJ0|1|A2|G|157
5AJ0|1|A2|G|158
*
5AJ0|1|A2|C|269
5AJ0|1|A2|C|270
5AJ0|1|A2|G|271
5AJ0|1|A2|G|272
5AJ0|1|A2|A|273
5AJ0|1|A2|G|274
5AJ0|1|A2|U|275
5AJ0|1|A2|C|276
5AJ0|1|A2|G|277
*
5AJ0|1|A2|C|298
5AJ0|1|A2|A|299
5AJ0|1|A2|A|300
5AJ0|1|A2|A|301
5AJ0|1|A2|G|302
5AJ0|1|A2|C|303
5AJ0|1|A2|G|304
*
5AJ0|1|A2|U|321
5AJ0|1|A2|A|322
5AJ0|1|A2|A|323
5AJ0|1|A2|G|324
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L7a
- Chain AL
- 60S ribosomal protein L13
- Chain AN
- 60S ribosomal protein L15
- Chain Ah
- 60S ribosomal protein L35
- Chain Ai
- 60S ribosomal protein L36
Coloring options: