J5_5AJ0_003

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

5AJ0|1|A2|C|2268, 5AJ0|1|A2|U|2329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|G|1318
5AJ0|1|A2|G|1319
5AJ0|1|A2|A|1320
5AJ0|1|A2|G|1321
5AJ0|1|A2|U|1322
5AJ0|1|A2|C|1323
*
5AJ0|1|A2|G|1498
5AJ0|1|A2|G|1499
5AJ0|1|A2|A|1500
5AJ0|1|A2|C|1501
*
5AJ0|1|A2|G|1640
5AJ0|1|A2|U|1641
5AJ0|1|A2|U|1642
5AJ0|1|A2|C|1643
*
5AJ0|1|A2|G|2267
5AJ0|1|A2|C|2268
5AJ0|1|A2|C|2269
*
5AJ0|1|A2|G|2324
5AJ0|1|A2|C|2325
5AJ0|1|A2|A|2326
5AJ0|1|A2|G|2327
5AJ0|1|A2|A|2328
5AJ0|1|A2|U|2329
5AJ0|1|A2|C|2330

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Aa

60S ribosomal protein L27a

Chain Ae

60S ribosomal protein L32

Chain At

60S ribosomal protein L28