J5_5AJ0_004
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5AJ0|1|A2|G|3591, 5AJ0|1|A2|G|3596
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5AJ0_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.156
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|G|2834
5AJ0|1|A2|C|2835
5AJ0|1|A2|A|2836
5AJ0|1|A2|A|2837
5AJ0|1|A2|G|2838
5AJ0|1|A2|C|2839
5AJ0|1|A2|C|2840
5AJ0|1|A2|G|2841
5AJ0|1|A2|G|2842
*
5AJ0|1|A2|U|2866
5AJ0|1|A2|G|2867
*
5AJ0|1|A2|U|3584
5AJ0|1|A2|G|3585
*
5AJ0|1|A2|C|3589
5AJ0|1|A2|G|3590
5AJ0|1|A2|G|3591
5AJ0|1|A2|A|3592
5AJ0|1|A2|C|3593
5AJ0|1|A2|C|3594
5AJ0|1|A2|A|3595
5AJ0|1|A2|G|3596
5AJ0|1|A2|G|3597
*
5AJ0|1|A2|C|3806
5AJ0|1|A2|A|3807
5AJ0|1|A2|C|3808
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19
- Chain AV
- 60S ribosomal protein L23
- Chain AW
- 60S ribosomal protein L24
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
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