J5_5AJ0_005
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 5AJ0|1|A2|A|3879, 5AJ0|1|A2|A|4356, 5AJ0|1|A2|U|4517, 5AJ0|1|A2|U|4518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|A|3874
5AJ0|1|A2|G|3875
5AJ0|1|A2|A|3876
5AJ0|1|A2|A|3877
5AJ0|1|A2|G|3878
5AJ0|1|A2|A|3879
5AJ0|1|A2|C|3880
5AJ0|1|A2|C|3881
*
5AJ0|1|A2|G|4354
5AJ0|1|A2|G|4355
5AJ0|1|A2|A|4356
5AJ0|1|A2|U|4357
5AJ0|1|A2|A|4358
5AJ0|1|A2|A|4359
5AJ0|1|A2|C|4360
5AJ0|1|A2|U|4361
5AJ0|1|A2|G|4362
*
5AJ0|1|A2|C|4406
5AJ0|1|A2|U|4407
5AJ0|1|A2|U|4408
5AJ0|1|A2|C|4409
5AJ0|1|A2|G|4410
5AJ0|1|A2|A|4411
5AJ0|1|A2|U|4412
5AJ0|1|A2|G|4413
5AJ0|1|A2|U|4414
5AJ0|1|A2|C|4415
*
5AJ0|1|A2|G|4490
5AJ0|1|A2|G|4491
5AJ0|1|A2|U|4492
5AJ0|1|A2|U|4493
5AJ0|1|A2|U|4494
5AJ0|1|A2|A|4495
5AJ0|1|A2|G|4496
*
5AJ0|1|A2|U|4514
5AJ0|1|A2|A|4515
5AJ0|1|A2|G|4516
5AJ0|1|A2|U|4517
5AJ0|1|A2|U|4518
5AJ0|1|A2|U|4519
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8
- Chain AB
- 60S ribosomal protein L3
- Chain AC
- 60S ribosomal protein L4
- Chain AI
- 60S ribosomal protein L10
- Chain Ab
- 60S ribosomal protein L29
- Chain Bv
- Transfer RNA; tRNA
- Chain By
- Nascent protein chain
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