J5_5AJ0_007

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

5AJ0|1|B1|A|590, 5AJ0|1|B1|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|C|30
5AJ0|1|B1|U|31
5AJ0|1|B1|U|32
5AJ0|1|B1|G|33
5AJ0|1|B1|U|34
*
5AJ0|1|B1|A|521
5AJ0|1|B1|A|522
5AJ0|1|B1|A|523
5AJ0|1|B1|U|524
5AJ0|1|B1|A|525
5AJ0|1|B1|A|526
5AJ0|1|B1|C|527
*
5AJ0|1|B1|G|558
5AJ0|1|B1|G|559
5AJ0|1|B1|A|560
5AJ0|1|B1|A|561
5AJ0|1|B1|U|562
5AJ0|1|B1|G|563
5AJ0|1|B1|A|564
5AJ0|1|B1|G|565
*
5AJ0|1|B1|C|585
5AJ0|1|B1|G|586
5AJ0|1|B1|A|587
5AJ0|1|B1|G|588
5AJ0|1|B1|G|589
5AJ0|1|B1|A|590
5AJ0|1|B1|U|591
5AJ0|1|B1|C|592
5AJ0|1|B1|C|593
5AJ0|1|B1|A|594
5AJ0|1|B1|U|595
*
5AJ0|1|B1|A|641
5AJ0|1|B1|U|642
5AJ0|1|B1|A|643
5AJ0|1|B1|G|644

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S9

Chain BX

40S ribosomal protein S23

Chain Be

40S ribosomal protein S30