J5_5AJ0_008
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUGU*GCGAAUGGCU*AGAG*CAC*GGCAG
- Length
- 27 nucleotides
- Bulged bases
- 5AJ0|1|B1|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|B1|C|53
5AJ0|1|B1|A|54
5AJ0|1|B1|U|55
5AJ0|1|B1|G|56
5AJ0|1|B1|U|57
*
5AJ0|1|B1|G|88
5AJ0|1|B1|C|89
5AJ0|1|B1|G|90
5AJ0|1|B1|A|91
5AJ0|1|B1|A|92
5AJ0|1|B1|U|93
5AJ0|1|B1|G|94
5AJ0|1|B1|G|95
5AJ0|1|B1|C|96
5AJ0|1|B1|U|97
*
5AJ0|1|B1|A|433
5AJ0|1|B1|G|434
5AJ0|1|B1|A|435
5AJ0|1|B1|G|436
*
5AJ0|1|B1|C|457
5AJ0|1|B1|A|458
5AJ0|1|B1|C|459
*
5AJ0|1|B1|G|470
5AJ0|1|B1|G|471
5AJ0|1|B1|C|472
5AJ0|1|B1|A|473
5AJ0|1|B1|G|474
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain AV
- 60S ribosomal protein L23
- Chain BE
- 40S ribosomal protein S4, Y isoform 1
- Chain BG
- 40S ribosomal protein S6
- Chain BI
- 40S ribosomal protein S8
- Chain BJ
- 40S ribosomal protein S9
- Chain BY
- 40S ribosomal protein S24
Coloring options: