J5_5AJ4_003
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 5AJ4|1|BA|U|1069, 5AJ4|1|BA|G|1250, 5AJ4|1|BA|G|1251, 5AJ4|1|BA|A|1252, 5AJ4|1|BA|A|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5AJ4_003 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.2236
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AJ4|1|BA|U|1067
5AJ4|1|BA|U|1068
5AJ4|1|BA|U|1069
5AJ4|1|BA|A|1070
*
5AJ4|1|BA|U|1141
5AJ4|1|BA|U|1142
5AJ4|1|BA|C|1143
5AJ4|1|BA|G|1144
*
5AJ4|1|BA|C|1156
5AJ4|1|BA|U|1157
*
5AJ4|1|BA|A|1179
5AJ4|1|BA|G|1180
*
5AJ4|1|BA|C|1249
5AJ4|1|BA|G|1250
5AJ4|1|BA|G|1251
5AJ4|1|BA|A|1252
5AJ4|1|BA|A|1253
5AJ4|1|BA|C|1254
5AJ4|1|BA|A|1255
5AJ4|1|BA|A|1256
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B0
- MITORIBOSOMAL PROTEIN BL27M, MRPL27
- Chain B1
- MITORIBOSOMAL PROTEIN BL28M, MRPL28
- Chain B8
- MITORIBOSOMAL PROTEIN BL35M, MRPL35
- Chain BD
- MITORIBOSOMAL PROTEIN UL2M, MRPL2
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
Coloring options: