J5_5AKA_001

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5AKA|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5AKA_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5AKA|1|B|C|47
5AKA|1|B|G|48
5AKA|1|B|A|49
5AKA|1|B|U|50
5AKA|1|B|G|51
5AKA|1|B|A|52
5AKA|1|B|A|53
5AKA|1|B|G|54
*
5AKA|1|B|C|116
5AKA|1|B|G|117
5AKA|1|B|A|118
5AKA|1|B|A|119
5AKA|1|B|U|120
5AKA|1|B|G|121
*
5AKA|1|B|C|130
5AKA|1|B|A|131
*
5AKA|1|B|U|148
5AKA|1|B|A|149
5AKA|1|B|U|150
*
5AKA|1|B|A|176
5AKA|1|B|G|177
5AKA|1|B|G|178

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34