J5_5AKA_005
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 5AKA|1|B|A|2448, 5AKA|1|B|U|2449, 5AKA|1|B|U|2585, 5AKA|1|B|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AKA|1|B|G|2057
5AKA|1|B|A|2058
5AKA|1|B|A|2059
5AKA|1|B|A|2060
5AKA|1|B|G|2061
5AKA|1|B|A|2062
5AKA|1|B|C|2063
5AKA|1|B|C|2064
*
5AKA|1|B|G|2446
5AKA|1|B|G|2447
5AKA|1|B|A|2448
5AKA|1|B|U|2449
5AKA|1|B|A|2450
5AKA|1|B|A|2451
5AKA|1|B|C|2452
5AKA|1|B|A|2453
*
5AKA|1|B|U|2500
5AKA|1|B|C|2501
5AKA|1|B|G|2502
5AKA|1|B|A|2503
5AKA|1|B|U|2504
5AKA|1|B|G|2505
5AKA|1|B|U|2506
*
5AKA|1|B|G|2583
5AKA|1|B|U|2584
5AKA|1|B|U|2585
5AKA|1|B|U|2586
5AKA|1|B|A|2587
5AKA|1|B|G|2588
*
5AKA|1|B|C|2606
5AKA|1|B|G|2607
5AKA|1|B|G|2608
5AKA|1|B|U|2609
5AKA|1|B|C|2610
5AKA|1|B|C|2611
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S RIBOSOMAL PROTEIN L32
- Chain C
- 50S RIBOSOMAL PROTEIN L2
- Chain D
- 50S RIBOSOMAL PROTEIN L3
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain S
- 50S RIBOSOMAL PROTEIN L22
Coloring options: