J5_5AN9_001

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

5AN9|1|N|A|3150, 5AN9|1|N|G|3207, 5AN9|1|N|U|3311, 5AN9|1|N|U|3312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AN9|1|N|A|2665
5AN9|1|N|G|2666
5AN9|1|N|A|2667
5AN9|1|N|A|2668
5AN9|1|N|G|2669
5AN9|1|N|A|2670
5AN9|1|N|C|2671
5AN9|1|N|C|2672
*
5AN9|1|N|G|3148
5AN9|1|N|G|3149
5AN9|1|N|A|3150
5AN9|1|N|U|3151
5AN9|1|N|A|3152
5AN9|1|N|A|3153
5AN9|1|N|C|3154
5AN9|1|N|U|3155
5AN9|1|N|G|3156
*
5AN9|1|N|C|3200
5AN9|1|N|U|3201
5AN9|1|N|U|3202
5AN9|1|N|C|3203
5AN9|1|N|G|3204
5AN9|1|N|A|3205
5AN9|1|N|U|3206
5AN9|1|N|G|3207
5AN9|1|N|U|3208
*
5AN9|1|N|G|3285
5AN9|1|N|U|3286
5AN9|1|N|U|3287
5AN9|1|N|U|3288
5AN9|1|N|A|3289
5AN9|1|N|G|3290
*
5AN9|1|N|U|3308
5AN9|1|N|A|3309
5AN9|1|N|G|3310
5AN9|1|N|U|3311
5AN9|1|N|U|3312
5AN9|1|N|U|3313

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L3

Chain F

60S RIBOSOMAL PROTEIN L10

Chain J

RIBOSOME MATURATION PROTEIN SBDS