J5_5APN_002
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5APN|1|5|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5APN_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0777
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|5|G|658
5APN|1|5|G|659
5APN|1|5|A|660
5APN|1|5|G|661
5APN|1|5|U|662
5APN|1|5|C|663
*
5APN|1|5|G|799
5APN|1|5|G|800
5APN|1|5|A|801
5APN|1|5|C|802
*
5APN|1|5|G|941
5APN|1|5|U|942
5APN|1|5|U|943
5APN|1|5|C|944
*
5APN|1|5|G|1375
5APN|1|5|C|1376
*
5APN|1|5|G|1431
5APN|1|5|C|1432
5APN|1|5|A|1433
5APN|1|5|G|1434
5APN|1|5|A|1435
5APN|1|5|U|1436
5APN|1|5|C|1437
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain e
- 60S ribosomal protein L32
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
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