J5_5APN_005
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 5APN|1|5|A|2817, 5APN|1|5|U|2818, 5APN|1|5|G|2874, 5APN|1|5|U|2954, 5APN|1|5|U|2978, 5APN|1|5|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APN|1|5|A|2399
5APN|1|5|G|2400
5APN|1|5|A|2401
5APN|1|5|A|2402
5APN|1|5|G|2403
5APN|1|5|A|2404
5APN|1|5|C|2405
5APN|1|5|C|2406
*
5APN|1|5|G|2815
5APN|1|5|G|2816
5APN|1|5|A|2817
5APN|1|5|U|2818
5APN|1|5|A|2819
5APN|1|5|A|2820
5APN|1|5|C|2821
5APN|1|5|U|2822
5APN|1|5|G|2823
*
5APN|1|5|C|2867
5APN|1|5|U|2868
5APN|1|5|U|2869
5APN|1|5|C|2870
5APN|1|5|G|2871
5APN|1|5|A|2872
5APN|1|5|U|2873
5APN|1|5|G|2874
5APN|1|5|U|2875
*
5APN|1|5|G|2952
5APN|1|5|U|2953
5APN|1|5|U|2954
5APN|1|5|U|2955
5APN|1|5|A|2956
5APN|1|5|G|2957
*
5APN|1|5|U|2975
5APN|1|5|A|2976
5APN|1|5|G|2977
5APN|1|5|U|2978
5APN|1|5|U|2979
5APN|1|5|U|2980
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
Coloring options: