3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
Length
38 nucleotides
Bulged bases
5APN|1|5|A|2817, 5APN|1|5|U|2818, 5APN|1|5|G|2874, 5APN|1|5|U|2954, 5APN|1|5|U|2978, 5APN|1|5|U|2979
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5APN|1|5|A|2399
5APN|1|5|G|2400
5APN|1|5|A|2401
5APN|1|5|A|2402
5APN|1|5|G|2403
5APN|1|5|A|2404
5APN|1|5|C|2405
5APN|1|5|C|2406
*
5APN|1|5|G|2815
5APN|1|5|G|2816
5APN|1|5|A|2817
5APN|1|5|U|2818
5APN|1|5|A|2819
5APN|1|5|A|2820
5APN|1|5|C|2821
5APN|1|5|U|2822
5APN|1|5|G|2823
*
5APN|1|5|C|2867
5APN|1|5|U|2868
5APN|1|5|U|2869
5APN|1|5|C|2870
5APN|1|5|G|2871
5APN|1|5|A|2872
5APN|1|5|U|2873
5APN|1|5|G|2874
5APN|1|5|U|2875
*
5APN|1|5|G|2952
5APN|1|5|U|2953
5APN|1|5|U|2954
5APN|1|5|U|2955
5APN|1|5|A|2956
5APN|1|5|G|2957
*
5APN|1|5|U|2975
5APN|1|5|A|2976
5APN|1|5|G|2977
5APN|1|5|U|2978
5APN|1|5|U|2979
5APN|1|5|U|2980

Current chains

Chain 5
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain B
60S ribosomal protein L3
Chain C
60S ribosomal protein L4-A
Chain P
60S ribosomal protein L17-A
Chain a
60S ribosomal protein L28
Chain b
60S ribosomal protein L29
Chain y
Cytoplasmic 60S subunit biogenesis factor REI1

Coloring options:

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