J5_5APO_004
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5APO|1|5|G|2116||||P_1, 5APO|1|5|G|2121||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5APO_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.077
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|G|1906||||P_1
5APO|1|5|C|1907||||P_1
5APO|1|5|A|1908||||P_1
5APO|1|5|A|1909||||P_1
5APO|1|5|A|1910||||P_1
5APO|1|5|A|1911||||P_1
5APO|1|5|U|1912||||P_1
5APO|1|5|A|1913||||P_1
5APO|1|5|G|1914||||P_1
*
5APO|1|5|U|1938||||P_1
5APO|1|5|G|1939||||P_1
*
5APO|1|5|U|2109||||P_1
5APO|1|5|G|2110||||P_1
*
5APO|1|5|C|2114||||P_1
5APO|1|5|G|2115||||P_1
5APO|1|5|G|2116||||P_1
5APO|1|5|A|2117||||P_1
5APO|1|5|C|2118||||P_1
5APO|1|5|A|2119||||P_1
5APO|1|5|A|2120||||P_1
5APO|1|5|G|2121||||P_1
5APO|1|5|G|2122||||P_1
*
5APO|1|5|C|2331||||P_1
5APO|1|5|A|2332||||P_1
5APO|1|5|C|2333||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain W
- 60S ribosomal protein L24-A
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