J5_5CZP_001

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5CZP_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0659

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5CZP|1|QA|C|36
5CZP|1|QA|U|37
5CZP|1|QA|G|38
5CZP|1|QA|G|39
*
5CZP|1|QA|C|403
5CZP|1|QA|U|404
5CZP|1|QA|U|405
5CZP|1|QA|G|406
*
5CZP|1|QA|C|436
5CZP|1|QA|U|437
5CZP|1|QA|G|438
5CZP|1|QA|A|439
5CZP|1|QA|A|441
5CZP|1|QA|C|442
*
5CZP|1|QA|G|492
5CZP|1|QA|G|493
5CZP|1|QA|U|494
5CZP|1|QA|A|495
5CZP|1|QA|A|496
5CZP|1|QA|U|498
5CZP|1|QA|A|499
5CZP|1|QA|G|500
*
5CZP|1|QA|C|545
5CZP|1|QA|G|546
5CZP|1|QA|A|547
5CZP|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9