3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
5DFE|1|RA|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5DFE_006 not in the Motif Atlas
Homologous match to J5_9DFE_004
Geometric discrepancy: 0.0506
The information below is about J5_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.6
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

5DFE|1|RA|C|584
5DFE|1|RA|G|585
5DFE|1|RA|A|586
5DFE|1|RA|C|587
5DFE|1|RA|U|588
5DFE|1|RA|C|589
*
5DFE|1|RA|G|668
5DFE|1|RA|G|669
5DFE|1|RA|A|670
5DFE|1|RA|C|671
*
5DFE|1|RA|G|809
5DFE|1|RA|U|810
5DFE|1|RA|U|811
5DFE|1|RA|C|812
*
5DFE|1|RA|G|1195
5DFE|1|RA|C|1196
*
5DFE|1|RA|G|1250
5DFE|1|RA|C|1251
5DFE|1|RA|G|1252
5DFE|1|RA|A|1253
5DFE|1|RA|A|1254
5DFE|1|RA|U|1255
5DFE|1|RA|G|1256

Current chains

Chain RA
T23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15
Chain RU
50S ribosomal protein L20
Chain RV
50S ribosomal protein L21

Coloring options:


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