J5_5DFE_011

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5DFE_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0651

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5DFE|1|XA|C|36
5DFE|1|XA|U|37
5DFE|1|XA|G|38
5DFE|1|XA|G|39
*
5DFE|1|XA|C|403
5DFE|1|XA|U|404
5DFE|1|XA|U|405
5DFE|1|XA|G|406
*
5DFE|1|XA|C|436
5DFE|1|XA|U|437
5DFE|1|XA|G|438
5DFE|1|XA|A|439
5DFE|1|XA|A|441
5DFE|1|XA|C|442
*
5DFE|1|XA|G|492
5DFE|1|XA|G|493
5DFE|1|XA|U|494
5DFE|1|XA|A|495
5DFE|1|XA|A|496
5DFE|1|XA|U|498
5DFE|1|XA|A|499
5DFE|1|XA|G|500
*
5DFE|1|XA|C|545
5DFE|1|XA|G|546
5DFE|1|XA|A|547
5DFE|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12