J5_5DM6_003
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGGAUG
- Length
- 23 nucleotides
- Bulged bases
- 5DM6|1|X|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5DM6_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0502
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5DM6|1|X|C|584
5DM6|1|X|G|585
5DM6|1|X|A|586
5DM6|1|X|C|587
5DM6|1|X|U|588
5DM6|1|X|U|589
*
5DM6|1|X|A|668
5DM6|1|X|G|669
5DM6|1|X|A|670
5DM6|1|X|C|671
*
5DM6|1|X|G|809
5DM6|1|X|U|810
5DM6|1|X|U|811
5DM6|1|X|C|812
*
5DM6|1|X|G|1195
5DM6|1|X|C|1196
*
5DM6|1|X|G|1250
5DM6|1|X|C|1251
5DM6|1|X|G|1252
5DM6|1|X|G|1253
5DM6|1|X|A|1254
5DM6|1|X|U|1255
5DM6|1|X|G|1256
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
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