J5_5DM6_005
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAAGACCC*GGGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 39 nucleotides
- Bulged bases
- 5DM6|1|X|A|2062, 5DM6|1|X|A|2448, 5DM6|1|X|U|2506, 5DM6|1|X|U|2585, 5DM6|1|X|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DM6|1|X|A|2057
5DM6|1|X|A|2058
5DM6|1|X|A|2059
5DM6|1|X|A|2060
5DM6|1|X|G|2061
5DM6|1|X|A|2062
5DM6|1|X|C|2063
5DM6|1|X|C|2064
5DM6|1|X|C|2065
*
5DM6|1|X|G|2445
5DM6|1|X|G|2446
5DM6|1|X|G|2447
5DM6|1|X|A|2448
5DM6|1|X|U|2449
5DM6|1|X|A|2450
5DM6|1|X|A|2451
5DM6|1|X|C|2452
5DM6|1|X|A|2453
*
5DM6|1|X|U|2500
5DM6|1|X|C|2501
5DM6|1|X|G|2502
5DM6|1|X|A|2503
5DM6|1|X|U|2504
5DM6|1|X|G|2505
5DM6|1|X|U|2506
5DM6|1|X|C|2507
*
5DM6|1|X|G|2582
5DM6|1|X|G|2583
5DM6|1|X|U|2584
5DM6|1|X|U|2585
5DM6|1|X|C|2586
5DM6|1|X|A|2587
5DM6|1|X|G|2588
*
5DM6|1|X|C|2606
5DM6|1|X|G|2607
5DM6|1|X|G|2608
5DM6|1|X|U|2609
5DM6|1|X|C|2610
5DM6|1|X|U|2611
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain J
- 50S ribosomal protein L16
- Chain P
- 50S ribosomal protein L22
- Chain T
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L32
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