J5_5EL6_002
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5EL6|1|13|A|109, 5EL6|1|13|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5EL6_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0959
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5EL6|1|13|C|58
5EL6|1|13|A|59
5EL6|1|13|A|60
5EL6|1|13|G|61
*
5EL6|1|13|C|106
5EL6|1|13|G|107
5EL6|1|13|G|108
5EL6|1|13|A|109
5EL6|1|13|C|110
5EL6|1|13|G|111
5EL6|1|13|G|112
5EL6|1|13|G|113
*
5EL6|1|13|C|314
5EL6|1|13|A|315
5EL6|1|13|G|316
*
5EL6|1|13|C|337
5EL6|1|13|A|338
5EL6|1|13|C|339
*
5EL6|1|13|G|350
5EL6|1|13|G|351
5EL6|1|13|C|352
5EL6|1|13|A|353
5EL6|1|13|G|354
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 68
- 50S ribosomal protein L14
- Chain 7I
- 30S ribosomal protein S16
- Chain B8
- 50S ribosomal protein L19
- Chain BI
- 30S ribosomal protein S20
Coloring options: