J5_5EL6_015
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5EL6|1|1H|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5EL6_015 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0614
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5EL6|1|1H|C|584
5EL6|1|1H|G|585
5EL6|1|1H|A|586
5EL6|1|1H|C|587
5EL6|1|1H|U|588
5EL6|1|1H|C|589
*
5EL6|1|1H|G|668
5EL6|1|1H|G|669
5EL6|1|1H|A|670
5EL6|1|1H|C|671
*
5EL6|1|1H|G|809
5EL6|1|1H|U|810
5EL6|1|1H|U|811
5EL6|1|1H|C|812
*
5EL6|1|1H|G|1195
5EL6|1|1H|C|1196
*
5EL6|1|1H|G|1250
5EL6|1|1H|C|1251
5EL6|1|1H|G|1252
5EL6|1|1H|A|1253
5EL6|1|1H|A|1254
5EL6|1|1H|U|1255
5EL6|1|1H|G|1256
Current chains
- Chain 1H
- 23S rRNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain 78
- 50S ribosomal protein L15
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain Q8
- 50S ribosomal protein L35
Coloring options: