J5_5EL7_003

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5EL7|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5EL7_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0691

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5EL7|1|14|C|47
5EL7|1|14|G|48
5EL7|1|14|A|49
5EL7|1|14|U|50
5EL7|1|14|G|51
5EL7|1|14|A|52
5EL7|1|14|A|53
5EL7|1|14|G|54
*
5EL7|1|14|C|116
5EL7|1|14|G|117
5EL7|1|14|A|118
5EL7|1|14|A|119
5EL7|1|14|U|120
5EL7|1|14|G|121
*
5EL7|1|14|C|130
5EL7|1|14|G|131
*
5EL7|1|14|C|148
5EL7|1|14|A|149
5EL7|1|14|C|150
*
5EL7|1|14|G|176
5EL7|1|14|G|177
5EL7|1|14|G|178

Current chains

Chain 14

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34