J5_5EL7_021
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5EL7_021 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0911
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5EL7|1|1G|C|36
5EL7|1|1G|U|37
5EL7|1|1G|G|38
5EL7|1|1G|G|39
*
5EL7|1|1G|C|403
5EL7|1|1G|U|404
5EL7|1|1G|U|405
5EL7|1|1G|G|406
*
5EL7|1|1G|C|436
5EL7|1|1G|U|437
5EL7|1|1G|G|438
5EL7|1|1G|A|439
5EL7|1|1G|A|440
5EL7|1|1G|C|442
*
5EL7|1|1G|G|492
5EL7|1|1G|G|493
5EL7|1|1G|U|494
5EL7|1|1G|A|495
5EL7|1|1G|A|496
5EL7|1|1G|U|497
5EL7|1|1G|A|498
5EL7|1|1G|G|500
*
5EL7|1|1G|C|545
5EL7|1|1G|G|546
5EL7|1|1G|A|547
5EL7|1|1G|G|548
Current chains
- Chain 1G
- 16S rRNA
Nearby chains
- Chain 32
- 30S ribosomal protein S4
- Chain 3A
- 30S ribosomal protein S12
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