J5_5F8K_007
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5F8K|1|1A|U|2098, 5F8K|1|1A|G|2440, 5F8K|1|1A|G|2441, 5F8K|1|1A|A|2442, 5F8K|1|1A|U|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5F8K_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.05
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5F8K|1|1A|U|2096
5F8K|1|1A|U|2097
5F8K|1|1A|U|2098
5F8K|1|1A|A|2099
*
5F8K|1|1A|U|2255
5F8K|1|1A|U|2256
5F8K|1|1A|U|2257
5F8K|1|1A|G|2258
*
5F8K|1|1A|C|2270
5F8K|1|1A|G|2271
*
5F8K|1|1A|C|2293
5F8K|1|1A|G|2294
*
5F8K|1|1A|C|2439
5F8K|1|1A|G|2440
5F8K|1|1A|G|2441
5F8K|1|1A|A|2442
5F8K|1|1A|U|2443
5F8K|1|1A|A|2444
5F8K|1|1A|A|2445
5F8K|1|1A|A|2446
5F8K|1|1A|A|2447
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Z
- 50S ribosomal protein L25
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