J5_5FDU_013
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5FDU|1|2A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5FDU_013 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0442
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5FDU|1|2A|C|584
5FDU|1|2A|G|585
5FDU|1|2A|A|586
5FDU|1|2A|C|587
5FDU|1|2A|U|588
5FDU|1|2A|C|589
*
5FDU|1|2A|G|668
5FDU|1|2A|G|669
5FDU|1|2A|A|670
5FDU|1|2A|C|671
*
5FDU|1|2A|G|809
5FDU|1|2A|U|810
5FDU|1|2A|U|811
5FDU|1|2A|C|812
*
5FDU|1|2A|G|1195
5FDU|1|2A|C|1196
*
5FDU|1|2A|G|1250
5FDU|1|2A|C|1251
5FDU|1|2A|G|1252
5FDU|1|2A|A|1253
5FDU|1|2A|A|1254
5FDU|1|2A|U|1255
5FDU|1|2A|G|1256
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 28
- 50S ribosomal protein L35
- Chain 2F
- 50S ribosomal protein L4
- Chain 2P
- 50S ribosomal protein L15
- Chain 2U
- 50S ribosomal protein L20
- Chain 2V
- 50S ribosomal protein L21
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