J5_5FLX_001
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 5FLX|1|1|A|560, 5FLX|1|1|G|589, 5FLX|1|1|A|590, 5FLX|1|1|U|591, 5FLX|1|1|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FLX|1|1|C|30
5FLX|1|1|U|31
5FLX|1|1|U|32
5FLX|1|1|G|33
5FLX|1|1|U|34
*
5FLX|1|1|A|521
5FLX|1|1|A|522
5FLX|1|1|A|523
5FLX|1|1|U|524
5FLX|1|1|A|525
5FLX|1|1|A|526
5FLX|1|1|C|527
*
5FLX|1|1|G|558
5FLX|1|1|G|559
5FLX|1|1|A|560
5FLX|1|1|A|561
5FLX|1|1|U|562
5FLX|1|1|G|563
5FLX|1|1|A|564
5FLX|1|1|G|565
*
5FLX|1|1|C|585
5FLX|1|1|G|586
5FLX|1|1|A|587
5FLX|1|1|G|588
5FLX|1|1|G|589
5FLX|1|1|A|590
5FLX|1|1|U|591
5FLX|1|1|C|592
5FLX|1|1|C|593
5FLX|1|1|A|594
5FLX|1|1|U|595
*
5FLX|1|1|A|641
5FLX|1|1|U|642
5FLX|1|1|A|643
5FLX|1|1|G|644
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain X
- 40S RIBOSOMAL PROTEIN S23
- Chain e
- 40S RIBOSOMAL PROTEIN S30
Coloring options: