J5_5FLX_002
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGU*GCGAAUGGCU*AGAG*CAC*GGCAG
- Length
- 27 nucleotides
- Bulged bases
- 5FLX|1|1|A|92, 5FLX|1|1|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FLX|1|1|C|53
5FLX|1|1|A|54
5FLX|1|1|U|55
5FLX|1|1|G|56
5FLX|1|1|U|57
*
5FLX|1|1|G|88
5FLX|1|1|C|89
5FLX|1|1|G|90
5FLX|1|1|A|91
5FLX|1|1|A|92
5FLX|1|1|U|93
5FLX|1|1|G|94
5FLX|1|1|G|95
5FLX|1|1|C|96
5FLX|1|1|U|97
*
5FLX|1|1|A|433
5FLX|1|1|G|434
5FLX|1|1|A|435
5FLX|1|1|G|436
*
5FLX|1|1|C|457
5FLX|1|1|A|458
5FLX|1|1|C|459
*
5FLX|1|1|G|470
5FLX|1|1|G|471
5FLX|1|1|C|472
5FLX|1|1|A|473
5FLX|1|1|G|474
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
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