J5_5FLX_003

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUCUUGG*CCCUUGC*GCGUUU*AAUGGAAUAGGACC*GCCAUGAU

Length

42 nucleotides

Bulged bases

5FLX|1|1|C|687, 5FLX|1|1|C|741, 5FLX|1|1|C|797, 5FLX|1|1|G|798, 5FLX|1|1|U|871, 5FLX|1|1|G|873, 5FLX|1|1|A|913, 5FLX|1|1|U|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|1|A|685
5FLX|1|1|U|686
5FLX|1|1|C|687
5FLX|1|1|U|688
5FLX|1|1|U|689
5FLX|1|1|G|690
5FLX|1|1|G|691
*
5FLX|1|1|C|739
5FLX|1|1|C|740
5FLX|1|1|C|741
5FLX|1|1|U|742
5FLX|1|1|U|743
5FLX|1|1|G|744
5FLX|1|1|C|745
*
5FLX|1|1|G|796
5FLX|1|1|C|797
5FLX|1|1|G|798
5FLX|1|1|U|799
5FLX|1|1|U|800
5FLX|1|1|U|801
*
5FLX|1|1|A|864
5FLX|1|1|A|865
5FLX|1|1|U|866
5FLX|1|1|G|867
5FLX|1|1|G|868
5FLX|1|1|A|869
5FLX|1|1|A|870
5FLX|1|1|U|871
5FLX|1|1|A|872
5FLX|1|1|G|873
5FLX|1|1|G|874
5FLX|1|1|A|875
5FLX|1|1|C|876
5FLX|1|1|C|877
*
5FLX|1|1|G|910
5FLX|1|1|C|911
5FLX|1|1|C|912
5FLX|1|1|A|913
5FLX|1|1|U|914
5FLX|1|1|G|915
5FLX|1|1|A|916
5FLX|1|1|U|917

Current chains

Chain 1

18S RRNA

Nearby chains

Chain H

40S RIBOSOMAL PROTEIN S7

Chain L

40S RIBOSOMAL PROTEIN S11

Chain N

40S RIBOSOMAL PROTEIN S13

Chain W

40S RIBOSOMAL PROTEIN S15A

Chain X

40S RIBOSOMAL PROTEIN S23