J5_5G2X_002
3D structure
- PDB id
- 5G2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure a of Group II Intron Complexed with its Reverse Transcriptase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUAUAAGGUAUAAGUUGUGUUUACUGAACGCAAGUUUCUAAUUUCG*CGAUAGAG*CUCUAGUACAAAG*UUUGUACAAUCUG*UGGGAACGAAACGAAAGCGAUGCCGAGAAU
- Length
- 110 nucleotides
- Bulged bases
- 5G2X|1|A|G|199, 5G2X|1|A|A|200, 5G2X|1|A|A|201, 5G2X|1|A|C|202, 5G2X|1|A|A|214, 5G2X|1|A|C|218, 5G2X|1|A|A|256, 5G2X|1|A|G|257, 5G2X|1|A|C|316, 5G2X|1|A|U|317, 5G2X|1|A|A|336, 5G2X|1|A|C|337, 5G2X|1|A|A|356, 5G2X|1|A|G|357, 5G2X|1|A|A|358
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5G2X|1|A|A|174
5G2X|1|A|U|175
5G2X|1|A|A|176
5G2X|1|A|U|177
5G2X|1|A|A|178
5G2X|1|A|A|179
5G2X|1|A|G|180
5G2X|1|A|G|181
5G2X|1|A|U|182
5G2X|1|A|A|183
5G2X|1|A|U|184
5G2X|1|A|A|185
5G2X|1|A|A|186
5G2X|1|A|G|187
5G2X|1|A|U|188
5G2X|1|A|U|189
5G2X|1|A|G|190
5G2X|1|A|U|191
5G2X|1|A|G|192
5G2X|1|A|U|193
5G2X|1|A|U|194
5G2X|1|A|U|195
5G2X|1|A|A|196
5G2X|1|A|C|197
5G2X|1|A|U|198
5G2X|1|A|G|199
5G2X|1|A|A|200
5G2X|1|A|A|201
5G2X|1|A|C|202
5G2X|1|A|G|203
5G2X|1|A|C|204
5G2X|1|A|A|205
5G2X|1|A|A|206
5G2X|1|A|G|207
5G2X|1|A|U|208
5G2X|1|A|U|209
5G2X|1|A|U|210
5G2X|1|A|C|211
5G2X|1|A|U|212
5G2X|1|A|A|213
5G2X|1|A|A|214
5G2X|1|A|U|215
5G2X|1|A|U|216
5G2X|1|A|U|217
5G2X|1|A|C|218
5G2X|1|A|G|219
*
5G2X|1|A|C|229
5G2X|1|A|G|230
5G2X|1|A|A|231
5G2X|1|A|U|232
5G2X|1|A|A|233
5G2X|1|A|G|234
5G2X|1|A|A|235
5G2X|1|A|G|236
*
5G2X|1|A|C|252
5G2X|1|A|U|253
5G2X|1|A|C|254
5G2X|1|A|U|255
5G2X|1|A|A|256
5G2X|1|A|G|257
5G2X|1|A|U|258
5G2X|1|A|A|259
5G2X|1|A|C|260
5G2X|1|A|A|261
5G2X|1|A|A|262
5G2X|1|A|A|263
5G2X|1|A|G|264
*
5G2X|1|A|U|306
5G2X|1|A|U|307
5G2X|1|A|U|308
5G2X|1|A|G|309
5G2X|1|A|U|310
5G2X|1|A|A|311
5G2X|1|A|C|312
5G2X|1|A|A|313
5G2X|1|A|A|314
5G2X|1|A|U|315
5G2X|1|A|C|316
5G2X|1|A|U|317
5G2X|1|A|G|318
*
5G2X|1|A|U|331
5G2X|1|A|G|332
5G2X|1|A|G|333
5G2X|1|A|G|334
5G2X|1|A|A|335
5G2X|1|A|A|336
5G2X|1|A|C|337
5G2X|1|A|G|338
5G2X|1|A|A|339
5G2X|1|A|A|340
5G2X|1|A|A|341
5G2X|1|A|C|342
5G2X|1|A|G|343
5G2X|1|A|A|344
5G2X|1|A|A|345
5G2X|1|A|A|346
5G2X|1|A|G|347
5G2X|1|A|C|348
5G2X|1|A|G|349
5G2X|1|A|A|350
5G2X|1|A|U|351
5G2X|1|A|G|352
5G2X|1|A|C|353
5G2X|1|A|C|354
5G2X|1|A|G|355
5G2X|1|A|A|356
5G2X|1|A|G|357
5G2X|1|A|A|358
5G2X|1|A|A|359
5G2X|1|A|U|360
Current chains
- Chain A
- GROUP II INTRON
Nearby chains
- Chain B
- 5'-R(*CP*AP*CP*AP*UP*CP*CP*AP*UP*AP*AP*CP)-3'
- Chain C
- GROUP II INTRON-ENCODED PROTEIN LTRA
Coloring options: