J5_5G2X_003

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CU*AAAA*UUAAUC*GAAUUUACCAAG

Length

28 nucleotides

Bulged bases

5G2X|1|A|A|168, 5G2X|1|A|A|169, 5G2X|1|A|U|367, 5G2X|1|A|U|368, 5G2X|1|A|A|372, 5G2X|1|A|A|373

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5G2X|1|A|C|25
5G2X|1|A|A|26
5G2X|1|A|A|27
5G2X|1|A|G|28
*
5G2X|1|A|C|44
5G2X|1|A|U|45
*
5G2X|1|A|A|62
5G2X|1|A|A|63
5G2X|1|A|A|64
5G2X|1|A|A|65
*
5G2X|1|A|U|166
5G2X|1|A|U|167
5G2X|1|A|A|168
5G2X|1|A|A|169
5G2X|1|A|U|170
5G2X|1|A|C|171
*
5G2X|1|A|G|363
5G2X|1|A|A|364
5G2X|1|A|A|365
5G2X|1|A|U|366
5G2X|1|A|U|367
5G2X|1|A|U|368
5G2X|1|A|A|369
5G2X|1|A|C|370
5G2X|1|A|C|371
5G2X|1|A|A|372
5G2X|1|A|A|373
5G2X|1|A|G|374

Current chains

Chain A

GROUP II INTRON

Nearby chains