J5_5GAD_004

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

5GAD|1|A|U|1758, 5GAD|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5GAD_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0728

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|1674
5GAD|1|A|C|1675
5GAD|1|A|A|1676
5GAD|1|A|A|1677
5GAD|1|A|A|1678
5GAD|1|A|A|1679
5GAD|1|A|U|1680
5GAD|1|A|G|1681
5GAD|1|A|G|1682
*
5GAD|1|A|C|1706
5GAD|1|A|G|1707
*
5GAD|1|A|U|1751
5GAD|1|A|C|1752
*
5GAD|1|A|G|1756
5GAD|1|A|A|1757
5GAD|1|A|U|1758
5GAD|1|A|A|1759
5GAD|1|A|C|1760
5GAD|1|A|C|1761
5GAD|1|A|A|1762
5GAD|1|A|G|1763
5GAD|1|A|C|1764
*
5GAD|1|A|G|1988
5GAD|1|A|G|1989
5GAD|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19