J5_5GAE_001

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5GAE|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5GAE_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0752

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5GAE|1|A|C|47
5GAE|1|A|G|48
5GAE|1|A|A|49
5GAE|1|A|U|50
5GAE|1|A|G|51
5GAE|1|A|A|52
5GAE|1|A|A|53
5GAE|1|A|G|54
*
5GAE|1|A|C|116
5GAE|1|A|G|117
5GAE|1|A|A|118
5GAE|1|A|A|119
5GAE|1|A|U|120
5GAE|1|A|G|121
*
5GAE|1|A|C|130
5GAE|1|A|A|131
*
5GAE|1|A|U|148
5GAE|1|A|A|149
5GAE|1|A|U|150
*
5GAE|1|A|A|176
5GAE|1|A|G|177
5GAE|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34