J5_5GAF_004

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

5GAF|1|A|U|1758, 5GAF|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5GAF_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0728

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5GAF|1|A|G|1674
5GAF|1|A|C|1675
5GAF|1|A|A|1676
5GAF|1|A|A|1677
5GAF|1|A|A|1678
5GAF|1|A|A|1679
5GAF|1|A|U|1680
5GAF|1|A|G|1681
5GAF|1|A|G|1682
*
5GAF|1|A|C|1706
5GAF|1|A|G|1707
*
5GAF|1|A|U|1751
5GAF|1|A|C|1752
*
5GAF|1|A|G|1756
5GAF|1|A|A|1757
5GAF|1|A|U|1758
5GAF|1|A|A|1759
5GAF|1|A|C|1760
5GAF|1|A|C|1761
5GAF|1|A|A|1762
5GAF|1|A|G|1763
5GAF|1|A|C|1764
*
5GAF|1|A|G|1988
5GAF|1|A|G|1989
5GAF|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19