J5_5GAK_003
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5GAK|1|1|G|2116, 5GAK|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5GAK_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1852
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|G|1906
5GAK|1|1|C|1907
5GAK|1|1|A|1908
5GAK|1|1|A|1909
5GAK|1|1|A|1910
5GAK|1|1|A|1911
5GAK|1|1|U|1912
5GAK|1|1|A|1913
5GAK|1|1|G|1914
*
5GAK|1|1|U|1938
5GAK|1|1|G|1939
*
5GAK|1|1|U|2109
5GAK|1|1|G|2110
*
5GAK|1|1|C|2114
5GAK|1|1|G|2115
5GAK|1|1|G|2116
5GAK|1|1|A|2117
5GAK|1|1|C|2118
5GAK|1|1|A|2119
5GAK|1|1|A|2120
5GAK|1|1|G|2121
5GAK|1|1|G|2122
*
5GAK|1|1|C|2331
5GAK|1|1|A|2332
5GAK|1|1|C|2333
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain T
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L23-A
- Chain Y
- 60S ribosomal protein L24-A
Coloring options: