J5_5GAK_006
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAGAC*GUUAGUUU
- Length
- 44 nucleotides
- Bulged bases
- 5GAK|1|1|A|2404, 5GAK|1|1|A|2817, 5GAK|1|1|G|2874, 5GAK|1|1|U|2875, 5GAK|1|1|U|2978, 5GAK|1|1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|A|2399
5GAK|1|1|G|2400
5GAK|1|1|A|2401
5GAK|1|1|A|2402
5GAK|1|1|G|2403
5GAK|1|1|A|2404
5GAK|1|1|C|2405
5GAK|1|1|C|2406
*
5GAK|1|1|G|2815
5GAK|1|1|G|2816
5GAK|1|1|A|2817
5GAK|1|1|U|2818
5GAK|1|1|A|2819
5GAK|1|1|A|2820
5GAK|1|1|C|2821
5GAK|1|1|U|2822
5GAK|1|1|G|2823
*
5GAK|1|1|C|2867
5GAK|1|1|U|2868
5GAK|1|1|U|2869
5GAK|1|1|C|2870
5GAK|1|1|G|2871
5GAK|1|1|A|2872
5GAK|1|1|U|2873
5GAK|1|1|G|2874
5GAK|1|1|U|2875
5GAK|1|1|C|2876
*
5GAK|1|1|G|2951
5GAK|1|1|G|2952
5GAK|1|1|U|2953
5GAK|1|1|U|2954
5GAK|1|1|U|2955
5GAK|1|1|A|2956
5GAK|1|1|G|2957
5GAK|1|1|A|2958
5GAK|1|1|C|2959
*
5GAK|1|1|G|2973
5GAK|1|1|U|2974
5GAK|1|1|U|2975
5GAK|1|1|A|2976
5GAK|1|1|G|2977
5GAK|1|1|U|2978
5GAK|1|1|U|2979
5GAK|1|1|U|2980
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain B
- Transfer RNA; tRNA
- Chain E
- 60S ribosomal protein L2-A
- Chain F
- 60S ribosomal protein L3
- Chain G
- 60S ribosomal protein L4-A
- Chain R
- 60S ribosomal protein L17-A
- Chain d
- 60S ribosomal protein L29
- Chain q
- Eukaryotic translation initiation factor 5A-1
- Chain s
- 60S ribosomal protein L10
- Chain z
- nascent polypeptide chain
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