J5_5HCR_002
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5HCR|1|1A|U|287, 5HCR|1|1A|U|431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HCR|1|1A|C|256
5HCR|1|1A|U|257
5HCR|1|1A|A|258
5HCR|1|1A|A|259
5HCR|1|1A|A|260
5HCR|1|1A|C|261
*
5HCR|1|1A|G|281
5HCR|1|1A|G|282
5HCR|1|1A|G|283
5HCR|1|1A|U|284
5HCR|1|1A|C|285
5HCR|1|1A|G|286
5HCR|1|1A|U|287
5HCR|1|1A|G|288
*
5HCR|1|1A|C|395
5HCR|1|1A|G|396
5HCR|1|1A|A|397
5HCR|1|1A|G|398
5HCR|1|1A|U|399
5HCR|1|1A|A|400
5HCR|1|1A|C|401
*
5HCR|1|1A|G|425
5HCR|1|1A|G|426
5HCR|1|1A|A|427
5HCR|1|1A|A|428
5HCR|1|1A|U|429
5HCR|1|1A|C|430
5HCR|1|1A|U|431
5HCR|1|1A|G|432
*
5HCR|1|1A|U|447
5HCR|1|1A|A|448
5HCR|1|1A|A|449
5HCR|1|1A|G|450
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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